PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015064-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 1014aa    MW: 111614 Da    PI: 8.2979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015064-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71.1e-18390490199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l
  NNU_015064-RA 390 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLQVQDARGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKL 483
                    89**************************555567778***************9989999999***9.********************987.77778 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++++
  NNU_015064-RA 484 VMGFRKA 490
                    8777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-30387493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-20387489IPR015300DNA-binding pseudobarrel domain
CDDcd100177.19E-22388489No hitNo description
PfamPF023625.5E-16390489IPR003340B3 DNA binding domain
SMARTSM010192.0E-21390491IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392390491IPR003340B3 DNA binding domain
PROSITE profilePS5105013.802619669IPR011124Zinc finger, CW-type
PfamPF074965.7E-11624666IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MSSSSSAAAS AVQKICFNPD CKDAKSERLR KGWRLRNGDY AELCDRCASA FEEGRFCETF  60
HSEAAGWRSC EICGKRVHCG CIASFHAFLL LDVGGIECIA CARKNVIPPS NPIWPPSFFL  120
PLPLPERLKD VNMKNWSQIA GPSAVAGQWR QTPNIWNTAA AQPELQSRMP YEVERSGAVS  180
AMDKKAEDPS ERLASNSLKL AAPDRLANGK AGTETLATLN KFRREEGNLD GLHHSYCYIG  240
ENDPADARKG AFAESGLNTT AINFETPPGS SVNVSLPSSI SKDEPSTLHF GFGVPYASPN  300
DTNGATRVSG TQSQRQTPPP SAKQVYATPN NGPDSSGETQ LRNGRPRGDA RGRNQLLPRY  360
WPRITDQELQ QISGEYPLIS FTNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPTIS  420
QPEGLPLQVQ DARGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE  480
GKLVMGFRKA SSVPPSDQEN QTPKSGSGVS ANGEVNSADP ASTWSKVDKS GYIAKDVPGA  540
KSSLPSKRKS STLGSKSKRL RIENEDLIEL KLTWEEAQGL LCPPPNHAPS IVVIEGHEFE  600
EYEEAPVLGK PTILTTNNQG EKVQWAQCED CSKWRKLPFD VLLPSRWTCS KNLWDPKRSS  660
CTSAQELSIE QLEDMISSAK ISTSKRTKAA KQVKDTVEAS DGLDTLANLA IMGEGEALPP  720
SAQPTTKHPR HRPGCTCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKRQSE  780
KEAETARKKQ QQLQMPEKTT DQEDDPPIGN ASNGSPNQKI AVNEIADEDP NRKKPSSSPL  840
KGQIDLNIQP EREDEPSPVS DSGSMLKMIR DATEMYLRKQ RLPSSANRDL VVNQLEPGGS  900
STGGEKLDCV QHGIASCLKK PTVIRLYIMG GGRLRMSEHL IPPFDRDGWM ELLLNLNNKH  960
AGYGFSLKDG KGETFLMAAA YKDEPRSASA VFSEAFAFYW LWEGATRSLR IKNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1438950613130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1763776KRRFRTLMLRREKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268825.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y20.0A0A067G7Y2_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-168HSI2-like 1